FANTOM4 EdgeExpressDB: an integrated database of promoters, genes, microRNAs, expression dynamics and regulatory interactions | Genome Biology | Full Text
Characterization of Arabidopsis thaliana promoter bidirectionality and antisense RNAs by depletion of nuclear RNA decay enzymes | bioRxiv
Distal CpG islands can serve as alternative promoters to transcribe genes with silenced proximal promoters
Systematic analysis of transcription start sites in avian development | PLOS Biology
Cap analysis of gene expression (CAGE) sequencing reveals alternative promoter usage in complex disease | bioRxiv
Epigenomes | Free Full-Text | Promoter-Adjacent DNA Hypermethylation Can Downmodulate Gene Expression: TBX15 in the Muscle Lineage
The miR-430 locus with extreme promoter density forms a transcription body during the minor wave of zygotic genome activation - ScienceDirect
Epigenomes | Free Full-Text | Promoter-Adjacent DNA Hypermethylation Can Downmodulate Gene Expression: TBX15 in the Muscle Lineage
Comparison between annotated TSS and CAGE. (a) Distance between... | Download Scientific Diagram
Transcriptionally active enhancers in human cancer cells | Molecular Systems Biology
NET-CAGE characterizes the dynamics and topology of human transcribed cis-regulatory elements | Nature Genetics
Solving the transcription start site identification problem with ADAPT-CAGE: a Machine Learning algorithm for analysis of CAGE data | bioRxiv
Multiple transcription initiation and alternative promoter usage in G.... | Download Scientific Diagram
Cap analysis of gene expression reveals alternative promoter usage in a rat model of hypertension | Life Science Alliance
A promoter-level mammalian expression atlas | Nature
Examples of CAGE-inferred promoters and their response to TNF- a... | Download Scientific Diagram
Frontiers | Characterizing Promoter and Enhancer Sequences by a Deep Learning Method
Homer Software and Data Download
Linking FANTOM5 CAGE peaks to annotations with CAGEscan | Scientific Data
Enhancer–promoter entanglement explains their transcriptional interdependence | PNAS
Analysis of Enhancer–Promoter Interactions using CAGE and RADICL-Seq Technologies | SpringerLink
Solving the transcription start site identification problem with ADAPT-CAGE: a Machine Learning algorithm for the analysis of CAGE data | Scientific Reports
